PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00845g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 480aa    MW: 53122.3 Da    PI: 9.1767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00845g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056585323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C++Cgk F r  nL+ H r H
  Peaxi162Scf00845g00005.1 65 CEICGKGFQRDQNLQLHRRGH 85
                              *******************88 PP
2zf-C2H213.50.00022139161123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H +t+
  Peaxi162Scf00845g00005.1 139 WKCEKCSKRYAVQSDWKAHSKTC 161
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-66285No hitNo description
Gene3DG3DSA:3.30.160.604.2E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0766385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4896385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355230104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-6134159No hitNo description
SMARTSM00355130139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MTEEVISSGF THNSIEAGSN PPPLKKKRNL PGNPGNSQPY NLSNPEAEVI ALSPKTLMAT  60
NRFLCEICGK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEKS CIHNHPSRAL  120
GDLTGIKKHY CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC GTIFSRRDSF  180
VTHRAFCDAL AEETARISAA TNMHNPVAGN NINYHFIGAP LGTNMAQHFS SLFKPVSSNN  240
ENTDPTRREL SLWNMGQVSQ DQQETIANNN LQEIHQIAPF QTSAAPVYDT NSLLATRSNP  300
PPTSYWELVG SKISSINNAE TLTNTTNMSV PSLFSTQHQS HQQTTPSSAN MSATALLQKA  360
AQIGATTTDP SFLGNFGLSN CNNNNSKNNN QVIHEAGNKG FCGSFYVTTN NSITTSLGSD  420
LESSVNDFST MNQLQMYPPN KRRHIQTRED SVTGGGGQTR DFLGVGVQSI CHPSSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36135202370Zinc finger protein JACKDAW
5b3h_F1e-36135202370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-122HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765644.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_009765645.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_016453136.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_016453137.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-159IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1S3YLJ70.0A0A1S3YLJ7_TOBAC; zinc finger protein MAGPIE-like
TrEMBLA0A1U7VTC30.0A0A1U7VTC3_NICSY; zinc finger protein MAGPIE-like
STRINGXP_009765644.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-151C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]