PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00845g00010.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 280aa    MW: 31750.8 Da    PI: 9.1874
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00845g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.7e-34561961128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                               lp+G++F+P+d+el+ e+L++kv+ +       +   +    +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk
  Peaxi162Scf00845g00010.1  56 LPAGVKFDPSDQELL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVTNDGLVRHFFHRPSKAYTTGTRK 135
                               799************.99****999884554332...122222333336**********.555666788**************** PP

                       NAM  75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +r+++      + +W++tgk+++v++ k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Peaxi162Scf00845g00010.1 136 RRKVHtdvegnETRWHKTGKTRPVVV-KSKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 196
                               **744445555788************.9999**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3851215IPR003441NAC domain
PROSITE profilePS5100532.8356215IPR003441NAC domain
PfamPF023652.0E-1557196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTCINEQSIP TNVLSSNYNT GVTNESSKSM KTRTCPSCGH LIKSEEKAGI HNLPGLPAGV  60
KFDPSDQELL EHLEAKVRLD AHKLHPLIDE FIQTLEGENG ICYTHPEKLP GVTNDGLVRH  120
FFHRPSKAYT TGTRKRRKVH TDVEGNETRW HKTGKTRPVV VKSKVKGHKK ILVLYTNYGK  180
QRKPEKTNWV MHQYHLGDNE DEKEGELVVS KVFYQTQPRQ CGNSLLRNNC PNPAVRGNGQ  240
GSHFNEAATF VQCFNNPTLI SFDQYESRPN FNLRDTSFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-106HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587632.11e-166PREDICTED: NAC domain-containing protein 73-like
RefseqXP_016471988.11e-166PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S4A5Q91e-165A0A1S4A5Q9_TOBAC; NAC domain-containing protein 73-like
STRINGXP_009587632.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-110NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]