PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00856g00315.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 294aa MW: 33938.7 Da PI: 9.5496

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00856g00315.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1e-14	41	123	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ ++++Cka + ++ + + wev+++ Peaxi162Scf00856g00315.1 41 DFYQDHAKKHGFSITKRSCKKQwNEYDLITARRLSCHKFGKPARYQTS----------KKVDCKAGIYATLCSdRTSWEVQSVTV 115 6*****************99778889*********9986655..........9*********9999***** PP FAR1 84 eHnHelap 91 eHnH+l p Peaxi162Scf00856g00315.1 116 EHNHDLEP 123 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-11	41	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAGENNDPNV ATGEGPGINP RAPAGGPTVG MKFPSLEAMV DFYQDHAKKH GFSITKRSCK 60 KQWNEYDLIT ARRLSCHKFG KPARYQTSKK VDCKAGIYAT LCSDRTSWEV QSVTVEHNHD 120 LEPRLSWLMA AHRKVTPALK RDLVAADTAG VRPCRSFRTM EIMNGGTENM GCLPRDFRNF 180 INQHRKMRLK HGDTEALKFF LERRWAQFIC DPRLRENQWL DDIYSIRSQW VPVYLTDTFW 240 AGMRSTQRSE SMHAFFDQFI TSRTNLLTFV MQYEVALKTK LDKELKEEES SKNT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5