PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00877g00127.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YC

Protein Properties

Length: 271aa MW: 30772.9 Da PI: 5.0229

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00877g00127.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.9	6.1e-20	2	64	37	99
NF-YC 37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +m+s ++ vll+ka e+fileltlr+w++ae+ krrtl++ dia+a+ + + +fl ivp + Peaxi162Scf00877g00127.1 2 QMVSGHSTVLLAKASEVFILELTLRAWMQAEQVKRRTLQRYDIAKAIRSEELLNFLCGIVPLQ 64 79*********************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	2.6E-8	2	49	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	1.32E-12	2	67	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.6E-16	2	62	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MQMVSGHSTV LLAKASEVFI LELTLRAWMQ AEQVKRRTLQ RYDIAKAIRS EELLNFLCGI 60 VPLQSFKVDL CVFKSSMMTF QDELIVSIRI HSAGMPPQYF LSINGLICSN PTPRKVEEEA 120 NRGQGNDIHP AYQMVRPDNV PVQYQFQVEE EANRGQGNEI HPAYQMVRPD NVPLQYQFQV 180 EEEANRGQGN EIHPAYQMVR PDNVPVKEET KDGQGNEFHP AYQMVQPNNI PDSFISLQGI 240 PAQLMLPSLF NSSAEAEFSI NGTTPHKEER L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	4e-15	1	62	57	118	HapE
4g92_C	4e-15	1	62	57	118	HapE
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018624675.1	5e-99	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X12
TrEMBL	A0A1S4C214	9e-96	A0A1S4C214_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X5
TrEMBL	A0A1S4C283	7e-96	A0A1S4C283_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X8
STRING	XP_009594862.1	5e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13918	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-19	nuclear factor Y, subunit C2