PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00882g00218.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WOX
Protein Properties Length: 200aa    MW: 22966.9 Da    PI: 9.6832
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00882g00218.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-2161120357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Peaxi162Scf00882g00218.1  61 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITLQLgkygKIEGKNVFYWFQNHKARERQ 120
                               7*****************99**************************************97 PP
2Wus_type_Homeobox117.56.2e-3861122465
         Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                               tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
  Peaxi162Scf00882g00218.1  61 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITLQLGKYGKIEGKNVFYWFQNHKARERQKQ 122
                               8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.07456121IPR001356Homeobox domain
SuperFamilySSF466899.84E-1356126IPR009057Homeodomain-like
SMARTSM003899.0E-758125IPR001356Homeobox domain
CDDcd000865.37E-561122No hitNo description
PfamPF000469.2E-1961120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-762120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGSSAGSLSM KVHQFTRGFL EHNDAATPSL SLGCKRLRPL APKLTTNNND SINVESHPGG  60
TRWNPTQEQI GILEMLYRGG MRTPNAQQIE QITLQLGKYG KIEGKNVFYW FQNHKARERQ  120
KQKRNSMGLS QSPRTPPAIV TSPLTFDTRG EVVREEDSPY KRKCRTWTFE YLEEEEKRNC  180
REDASDRTLE LFPLHPEGMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3590060.0EU359006.1 Petunia x hybrida WOX4 (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613514.11e-121PREDICTED: WUSCHEL-related homeobox 4
RefseqXP_016487428.11e-121PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J93e-68WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLC0IN091e-141C0IN09_PETHY; WOX4
STRINGXP_009613514.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-70WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]