PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00907g00221.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 159aa MW: 18118.7 Da PI: 6.127

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00907g00221.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.4	7.8e-11	48	133	6	96
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 t+ v + ++lp+k +e ++++ + ++ + We+++ y +s++ + + Wk+F+++n+Lk+gD +vF+l++ s+ Peaxi162Scf00907g00221.1 48 TKTAVKPHYTMYLPRKMSKEL--PPAGAPAVLIY--GRKNWEMNF-YGANSNGKFSPTEWKKFADDNNLKVGDGLVFELSECSTS 127 555666677788888887666..23333234444..468888888.767777777888********************9854555 PP ..EEEE CS B3 91 elvvkv 96 + ++kv Peaxi162Scf00907g00221.1 128 KIHFKV 133 555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.61E-14	39	137	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-12	40	137	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.547	43	139	IPR003340	B3 DNA binding domain
CDD	cd10017	7.08E-15	46	137	No hit	No description
SMART	SM01019	3.0E-5	47	139	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-9	47	132	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MERRLNLSDE SAKESMKMPE YESSGIKEID EGLYWPLSGK PYVDMILTKT AVKPHYTMYL 60 PRKMSKELPP AGAPAVLIYG RKNWEMNFYG ANSNGKFSPT EWKKFADDNN LKVGDGLVFE 120 LSECSTSKIH FKVMILRGDF PSELLPEEEG ASHDHPIRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786634.1	1e-72	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_016490571.1	1e-72	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1S4BNV1	3e-71	A0A1S4BNV1_TOBAC; B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1U7XI63	3e-71	A0A1U7XI63_NICSY; B3 domain-containing protein Os04g0386900-like
STRING	XP_009786634.1	5e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-10	B3 family protein