PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00911g00049.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 384aa    MW: 43665.9 Da    PI: 7.8971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00911g00049.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.6e-53171441128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               + pGfrFhPtdeelv +yL++k+++k l++ e ik++diyk++PwdLpk ++ +e+ewyfF++rd+ky++++r+nr+t +g+Wka
  Peaxi162Scf00911g00049.1  17 MLPGFRFHPTDEELVGFYLRRKIQHKALSI-ELIKQLDIYKYDPWDLPKLATVGEREWYFFCPRDRKYRNSTRPNRVTGAGFWKA 100
                               579***************************.89***************8778899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Peaxi162Scf00911g00049.1 101 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 144
                               *********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5813175IPR003441NAC domain
PROSITE profilePS5100557.6417175IPR003441NAC domain
PfamPF023651.5E-2619144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEERNHETDS SKIDEVMLPG FRFHPTDEEL VGFYLRRKIQ HKALSIELIK QLDIYKYDPW  60
DLPKLATVGE REWYFFCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGSKCIGLKK  120
SLVFYKGRAA KGTKTDWMMH EFRLPSITDS STPKRFLDKN IPPNDSWAIC RIFKKANSNA  180
HRALSHSWVS PQMPSNTTPD LLTSNHLTSN EMSFLTKVSS AIQFSHDFQN SSVASFSPLD  240
LPPYRTIHPM TSHRLPQQIS ISDHDSTTSY TFSNSCTNLN NTDASSLLLN MSSSILGNFG  300
KASEGTMDYN FSITLPENVE ENNRQEAGTL LKEQNVNVDH IGFPVNGFPL NMTADAWKSN  360
FLWESSPCPS DQMSTSYSTN KCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-561917819168NO APICAL MERISTEM PROTEIN
1ut4_B3e-561917819168NO APICAL MERISTEM PROTEIN
1ut7_A3e-561917819168NO APICAL MERISTEM PROTEIN
1ut7_B3e-561917819168NO APICAL MERISTEM PROTEIN
3swm_A4e-561917822171NAC domain-containing protein 19
3swm_B4e-561917822171NAC domain-containing protein 19
3swm_C4e-561917822171NAC domain-containing protein 19
3swm_D4e-561917822171NAC domain-containing protein 19
3swp_A4e-561917822171NAC domain-containing protein 19
3swp_B4e-561917822171NAC domain-containing protein 19
3swp_C4e-561917822171NAC domain-containing protein 19
3swp_D4e-561917822171NAC domain-containing protein 19
4dul_A3e-561917819168NAC domain-containing protein 19
4dul_B3e-561917819168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590031.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-109FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3ZXF50.0A0A1S3ZXF5_TOBAC; protein FEZ-like
STRINGXP_009590031.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-109NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]