PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00920g00027.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 268aa    MW: 30528.9 Da    PI: 6.1644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00920g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.82e-111659245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +ien+ nr++tfskRr  i K A EL    ++++ +i+fs++++
  Peaxi162Scf00920g00027.1 16 KIENENNRYTTFSKRRSSIYKNAGELVSQFNIDIGIILFSPKNN 59
                              59***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.787767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-17878IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-9929IPR002100Transcription factor, MADS-box
PfamPF003196.1E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-94465IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.3460.109.7E-6149227IPR023329Chlorophyll a/b binding protein domain
SuperFamilySSF1035111.7E-8182258IPR023329Chlorophyll a/b binding protein domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEAKKTRGRQ KISMVKIENE NNRYTTFSKR RSSIYKNAGE LVSQFNIDIG IILFSPKNNP  60
FSFFHPTVEV VLDRFLEPHV QLNESTRLIA AHTRNKVNDI NRKAKELDKI EEAINKQAFE  120
YEEMKILCQK GWWESIEQLN VDEIIKFEAW LKATDFNVDR RMKQLENEAS SSMYQLFNLV  180
LDVIAEVVLV GGAEYYKITN GLDFEDKLHP GGLFDPLGLT CYPDQAAILK AYATGQGRVE  240
NLAAYLSDPF GKNLLTVIGG AAERAPTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xnl_s7e-36178268134244Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26
5xnm_s7e-36178268134244Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.19e-69PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV12e-67A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595132.11e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23AGAMOUS-like 61