PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00943g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12312.3 Da    PI: 6.7607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00943g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.14.6e-08957149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              k+ie++s r  tf k     +  A+ LSv+ ++e  v+++s++gk y++
  Peaxi162Scf00943g00016.1  9 KKIESESERMATFLKLMFEFFLEAHALSVMKGVELGVLVYSPSGKPYTF 57
                              68**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-6160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.872161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-15180IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-121057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MCRQKAKMKK IESESERMAT FLKLMFEFFL EAHALSVMKG VELGVLVYSP SGKPYTFGCP  60
SSFDTIIDKF LKWSENHPHD GVDNLQGSVP LPSGTSCVTT DLEVKSVVCF G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.13e-13AGAMOUS-like 91