PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00943g00019.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15952.2 Da    PI: 6.2617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00943g00019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.7e-1266114149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                               k+ie++  r  tf k +  +l  A+ELSv+++ ev ++++s++gk y++
  Peaxi162Scf00943g00019.1  66 KKIESEAVRLATFLKLKSELLMEAHELSVMTGEEVGILVYSPSGKPYTF 114
                               68**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.634137IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-6344IPR002100Transcription factor, MADS-box
PfamPF003194.9E-7333IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.25958118IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-858117IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-106080IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-1661132IPR002100Transcription factor, MADS-box
PfamPF003199.4E-1467114IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-108095IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-1095116IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSELFKEARD ISVTTGAEID VLLNSPSGKP YTYGCPFSFD TIRNRSNLIF SKKKSKSVCH  60
QKAEMKKIES EAVRLATFLK LKSELLMEAH ELSVMTGEEV GILVYSPSGK PYTFGYPSSF  120
ETILDRFLKW SENCPHDGAD DL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261581.19e-22PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A314L9X32e-20A0A314L9X3_NICAT; Agamous-like mads-box protein agl29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-15AGAMOUS-like 61