PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00954g00314.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 1101aa    MW: 121612 Da    PI: 6.4199
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00954g00314.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-20127228199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++r++lt+GW+  v+ ++L +gD+
  Peaxi162Scf00954g00314.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDS 210
                               99*****************************9777766.49******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F +d++++f  +++++++
  Peaxi162Scf00954g00314.1 211 VLFIRDEKHQF--LLGIRKT 228
                               ****6554555..9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-41118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-38118242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-18126227No hitNo description
SMARTSM010191.9E-21127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237127229IPR003340B3 DNA binding domain
PfamPF023621.3E-17127227IPR003340B3 DNA binding domain
PfamPF065072.8E-34253336IPR010525Auxin response factor
PROSITE profilePS5174526.8669881072IPR000270PB1 domain
SuperFamilySSF542772.35E-610051066No hitNo description
PfamPF023092.7E-610351073IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MNCYELNGDG FLLAGEKKSI NPELWQACAG PLVNLPVAGT HVVYFPQGHS EQVAASIKKD  60
VEAQVPNYPN LPSKLICLLH NVTLHADPET DEVYAQLTLQ PVPSFDKEAL LRSDLSMKAN  120
KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDYSL QPPAQELVAR DLHDNVWTFR  180
HVYRGQPKRH LLTTGWSLVV SGKRLFAGDS VLFIRDEKHQ FLLGIRKTNR QPTNLSSSVL  240
SSDSMHIGIL AAAAHAAANN SPFTVFYNPR AGPSEFVIPL AKYYKATYSS QVSLGMRFRM  300
MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERINR VSIWEIEPIT  360
APFLICSSPF FNSKRSRQPG MPDGDYSDMD GIFKRTMPWL GDDFGATDTQ GLPGLSLVQW  420
MNMQHNPSLA NPMLPNYLNS LSGSALQNLS GADLSRQLGL AAPQLHQQHN LQFNTHRPNQ  480
QGQQLDQLQK LPSTTLNTLD SIMQSQQQLS EISQQPRQNL TNQSLPTTQV QAQLLQAQSL  540
LQSQNALPHQ QSIQNQLQRN LPQNLPQQHP QQHILSQTQQ QSFMPSQPSD PVNQQIHFSD  600
NQAQLQLLQR LQQQQKSLLA QQSALQQSSQ LGAIQDQQKQ FLDVSQNFSR SLATSQMLDA  660
SQTTSTSTSL SQSQVAQQQM TRINSQSNLR FSQPTQQPKV QQQQSGILPD LSGPVGYSLP  720
RTTYQHSTNV SNLTGTAGGG QSVLIDDVPS WSTSVSTNSC QNVVQPSMNG RIHGNAGARE  780
ETTHCSGPLL HSSGLEVMSA NSNLVKELQH KPNVKPSVNV SKNQNHEFLA PQTLNTSGVQ  840
LDYLDSSSSA TSACLSQNDV HLQQTTDPLS SGSQPLIFRE SPDGEVQGDS RNNMAFGANM  900
ENQLGLPTMP DPLITKSLVG SRKDFSNNLS SGGGMLSSYE SPKEAQPELP ASMVPQYMTF  960
NSIDSSINDG NFMDGGAWDQ PPQLPRLRTY TKVYKRGAVG RSIDIGRYAG YEELKLDLAR  1020
RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVS CVRCIKILSP QEVQQMSLDG  1080
DFGGASVLPN QACSSSDAGD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360656.10.0PREDICTED: auxin response factor 19-like
RefseqXP_006360657.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM1B2I20.0M1B2I2_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000355920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19