PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00955g00032.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 218aa    MW: 23656.7 Da    PI: 9.0098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00955g00032.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.91e-1853922059
                              S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                              + rsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Peaxi162Scf00955g00032.1 53 HFRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 92
                              56*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-19616IPR003657WRKY domain
SMARTSM007742.6E-114793IPR003657WRKY domain
SuperFamilySSF1182905.23E-155294IPR003657WRKY domain
PfamPF031064.4E-145392IPR003657WRKY domain
PROSITE profilePS5081123.0555594IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-195594IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVKDLGEKKI ETKNNQERKR GCVDGKKVKE PIHGDLSLSI SSCFGGRVII TYHFRSYYKC  60
TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPTARTNS HEMAGSLPVT GGSRVRAEEN  120
DSVSLDLGVG IGYGMENRSN GQLHTLPAEA VRSQVQVSNS SMMLVQPAAV AACYGIVNGS  180
MSRFGSIDNR VQGTGFENLP LQPSTQCPQN YGRLLLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-1755943877Probable WRKY transcription factor 4
2lex_A2e-1755943877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111231e-160AB711123.1 Solanum tuberosum StWRKY10 mRNA for transcription factor, partial cds.
GenBankAB7111311e-160AB711131.1 Nicotiana benthamiana NbWRKY10 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232508.11e-105PREDICTED: probable WRKY transcription factor 20 isoform X2
TrEMBLA0A1J6L2L11e-102A0A1J6L2L1_NICAT; Putative wrky transcription factor 20
STRINGXP_009591627.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1745334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-32WRKY family protein