PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00978g00427.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YC
Protein Properties Length: 290aa    MW: 31962.3 Da    PI: 4.8999
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00978g00427.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.24.8e-156961898
                     NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia.aavtrt.........difdflvd 94
                              ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++    + + vt++         ++fdfl d
  Peaxi162Scf00978g00427.1  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHFSgNHVTQSlyftgnnsfNVFDFLKD 92
                              5789*********************************************99999999875543223333311112222357899999 PP

                     NF-YC 95 ivpr 98
                              +v r
  Peaxi162Scf00978g00427.1 93 VVSR 96
                              9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-23366IPR009072Histone-fold
SuperFamilySSF471138.02E-14367IPR009072Histone-fold
PfamPF008088.2E-16866IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK  60
TMNSFHFSGN HVTQSLYFTG NNSFNVFDFL KDVVSRVPDL GGSDAGAEAA AKRRKIAEDD  120
HGSDDDIKRS HMDETAHTSG SGRGRGRGRG RGRGRGARAL ERGDSNVRCE KLEDPADVSH  180
QNNEKQKQND ESMDHVAEPP ADSKNISAGR SPEGPARNFD LNIDLNESVE TTAIPVEAPS  240
SSTIQPPEVK HEEIPGWSLS EMEKMAIDPI QLASLNKGLD EEEEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-18285583Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144154RGRGRGRGRGR
2146155RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2446002e-38AC244600.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence.
GenBankHG9754502e-38HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755232e-38HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797323.11e-139PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBLA0A1U7Y2F61e-137A0A1U7Y2F6_NICSY; dr1-associated corepressor-like isoform X1
STRINGXP_009797323.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-45NF-YC family protein