PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00982g00026.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 341aa    MW: 38431.5 Da    PI: 7.0191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00982g00026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008161183123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+++F++   L  H  +H
  Peaxi162Scf00982g00026.1 161 YECKTCNRTFPSFQALGGHRASH 183
                               99**********99999998887 PP
2zf-C2H2140.00015240262123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  F++   L  H+r+H
  Peaxi162Scf00982g00026.1 240 HECSYCGAEFTSGQALGGHMRRH 262
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13160185IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-9160183No hitNo description
PROSITE profilePS5015710.658161188IPR007087Zinc finger, C2H2
SMARTSM003550.052161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-9235262No hitNo description
Gene3DG3DSA:3.30.160.604.2E-4238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-12240264IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367240267IPR007087Zinc finger, C2H2
SMARTSM003550.0098240262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEALEEVVGV PNKDHFHIVK GKRTKRLRLQ SPIPFTVAAT HDSSNACDYH KNDTDNGEDV  60
PHNNNNNNSD NNASPSSAPS AEMFINTFTE DEEETARYLI LMSKCDDHLH PRNKSRDGLP  120
PDKFELFNDD LKLYQSKFNS KRYIETSTNL GNGTKAGIFV YECKTCNRTF PSFQALGGHR  180
ASHKKPKTLT TELVNNKKLY FDFSDEDDQP SPSTTLCKTN KDVNRILPNS SNKYTSPRIH  240
ECSYCGAEFT SGQALGGHMR RHRGGVNVNS SLHLSNYVSP ATSIDQEFAN NTMKKVPRDG  300
LSLDLNLPVS DDNLDPKYPV VSLKQQDQEK TQRQQLVDCH Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004520.0AB000452.1 Petunia x hybrida mRNA for PEThy;ZPT2-6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587785.11e-142PREDICTED: putative uncharacterized protein DDB_G0287457
TrEMBLP937140.0P93714_PETHY; PEThy;ZPT2-6
STRINGXP_009587785.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-44C2H2 family protein