PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00998g00127.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 346aa    MW: 38716.5 Da    PI: 8.6889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00998g00127.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53161431128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka
  Peaxi162Scf00998g00127.1  16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 99 
                               79****************************.89***************988899******************************* PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+vl++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Peaxi162Scf00998g00127.1 100 TGTDKPVLTAgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143
                               ********9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6510176IPR003441NAC domain
PROSITE profilePS5100562.23116176IPR003441NAC domain
PfamPF023653.4E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESTDSSTGS HQQPQLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK GVKTNWIMHE YRLADNKTNN KPPGCDVANK KSLRLDDWVL CRIYKKHNTQ  180
RPIDHERDDL NDMMGSSIPP CNLPNTMSMS PFGHQPKIPG LKSINYGTLL ESDQNLYDGM  240
ISNTSDSVNK GSISQFSSKR PLAGLYWNDQ EATANDNSQS TKRFLGENMD DGLNMNVRTD  300
EQNGSIASLL SQLPQTPSIH QQQVLGSIND GVFRQPYQVS GMNWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-741317914168NO APICAL MERISTEM PROTEIN
1ut4_B2e-741317914168NO APICAL MERISTEM PROTEIN
1ut7_A2e-741317914168NO APICAL MERISTEM PROTEIN
1ut7_B2e-741317914168NO APICAL MERISTEM PROTEIN
4dul_A2e-741317914168NAC domain-containing protein 19
4dul_B2e-741317914168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2493221e-146EU249322.1 Petunia x hybrida nam-like protein 23 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581260.10.0PREDICTED: NAC transcription factor 56-like
SwissprotQ9LD441e-115NAC56_ARATH; NAC transcription factor 56
TrEMBLM1BP480.0M1BP48_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000496640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-117NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]