PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01007g00117.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 258aa    MW: 30595.4 Da    PI: 9.7981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01007g00117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.5e-191764148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Peaxi162Scf01007g00117.1 17 KGPWTSEEDRLLIEYVNLHGEGRWNSVARVAGLKRNGKSCRLRWVNYL 64
                              79********************************************97 PP
2Myb_DNA-binding55.31.5e-1770114147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +g  T+ E++l++++++++G++ W+tIar ++ gRt++++k++w+++
  Peaxi162Scf01007g00117.1  70 KGQITPHEEKLILELHARYGNR-WSTIARNLP-GRTDNEIKNYWRTH 114
                               5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3311264IPR017930Myb domain
SuperFamilySSF466894.12E-3114111IPR009057Homeodomain-like
SMARTSM007171.2E-161666IPR001005SANT/Myb domain
PfamPF002492.5E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241871IPR009057Homeodomain-like
CDDcd001673.19E-111964No hitNo description
PROSITE profilePS5129425.08865119IPR017930Myb domain
SMARTSM007172.2E-1669117IPR001005SANT/Myb domain
PfamPF002494.2E-1570114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2572118IPR009057Homeodomain-like
CDDcd001676.41E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSEQMDSWGM TKQGWRKGPW TSEEDRLLIE YVNLHGEGRW NSVARVAGLK RNGKSCRLRW  60
VNYLRPDLKK GQITPHEEKL ILELHARYGN RWSTIARNLP GRTDNEIKNY WRTHFKKKTK  120
NSRDKSEKSK VRLVKRQQWQ QQKQQQKLNT QTDSNRVVSL NNKKNYYASI LNKLGNKIVS  180
LLDKNENRIL PLVTQKENQE MANLYSNTAD QEEDDFLNSI LNDYTCVSLL ESSFNEDMMW  240
DDFWNNLDEY QCNVSTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244772.11e-125PREDICTED: transcription factor MYB24-like
TrEMBLA0A1U7Y7S01e-122A0A1U7Y7S0_NICSY; myb-related protein 340-like
STRINGXP_009795299.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-73myb domain protein 305