PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01016g00003.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 127aa MW: 13914 Da PI: 4.8258

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01016g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.8	5.1e-10	52	99	48	95
EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 48 vkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 v+l r+++ + +++++GW++Fv gLkegD +vF+l + ++++ ++k Peaxi162Scf01016g00003.1 52 VTL--RNGQMEwnMMFSGGWSKFVTNTGLKEGDGLVFELLECNNENVKFK 99 555..444444689************************764344434444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.82E-9	48	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.77E-9	51	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.4E-8	52	100	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-7	54	98	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.91	62	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MLQLNSSCKG IGHNTCERLG VTTQLNGPIS HPIIPILPPK ILQHLPANVA PVTLRNGQME 60 WNMMFSGGWS KFVTNTGLKE GDGLVFELLE CNNENVKFKV QTPDGSFLEE LLKELGEGTS 120 DNPVDIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M1DR54	1e-16	M1DR54_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400093051	2e-17	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54