PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01068g00314.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 374aa    MW: 42489.8 Da    PI: 8.577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01068g00314.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-1787132147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Peaxi162Scf01068g00314.1  87 RGHWRPHEDAKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 132
                               899*****************************.***********996 PP
2Myb_DNA-binding56.18.7e-18139182146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Peaxi162Scf01068g00314.1 139 RRAFSEEEEERLLTAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 182
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14882133IPR017930Myb domain
SMARTSM007179.4E-1586135IPR001005SANT/Myb domain
SuperFamilySSF466893.41E-2887180IPR009057Homeodomain-like
PfamPF002498.0E-1687132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2688140IPR009057Homeodomain-like
CDDcd001674.12E-1390131No hitNo description
PROSITE profilePS5129426.819134188IPR017930Myb domain
SMARTSM007173.9E-15138186IPR001005SANT/Myb domain
PfamPF002491.6E-14139181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20141187IPR009057Homeodomain-like
CDDcd001671.25E-11141181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRLLRFCVLA SCDFQEMNFL TQNSLVMDYN KGRHCLSNGS TDGKVLENPW IFHSMVEDEN  60
GTKLNVETEE VDLVGRKNNG GTKLCARGHW RPHEDAKLKE LVAQYGPQNW NLIAEKLEGR  120
SGKSCRLRWF NQLDPRINRR AFSEEEEERL LTAHKMYGNK WAMIARLFPG RTDNAVKNHW  180
HVIMARKHRE QNSVYRRRKP SNMQQFHSMG FPHVSGSDNA IQSNNLNSDS TISSTTNNMD  240
EHCASTCTDL SLTPSSSKVI FMKRLTHMQH HHHPLLEASK GFSRDAQEVK MESGVHPKFL  300
HGKEPRADTV DASHQYGCGG SDTNSDISAS ESVANNMTNV KMYGQNHENV KLVEKQMKSK  360
TMPAFIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32871877107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755223e-77HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489787.11e-167PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S4BLS51e-166A0A1S4BLS5_TOBAC; transcription factor LAF1-like
STRINGXP_009587330.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-72myb domain protein 105