PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01073g00009.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 248aa    MW: 28173.3 Da    PI: 9.0697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01073g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-08155197754
                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++ r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Peaxi162Scf01073g00009.1 155 IAARHRREKISEKMRVLQRLVPGG-----TKMDTASMLDEAIHYMKFL 197
                               56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-10154202No hitNo description
SMARTSM003533.2E-13154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-14155206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5156197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14157221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDIDLFKSIN SEDQMEMMVM MHMNEMPTME FSPQGINNNT NNLPQIIHDH NSSTFLNIPS  60
TNISFTNSST LVHDQESSIT LPFLENSTSS TRDYKDQVSL TSHLTFPSTK RNNSMGAMRE  120
MIFKIAAMQP IHIDPESIKP PKRKNVKISN DPQSIAARHR REKISEKMRV LQRLVPGGTK  180
MDTASMLDEA IHYMKFLKKQ VQNLEKARTV ASAGCLGFPV PMSLSGNNYN LPMGTRTYHQ  240
PYHQCIQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-54HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257960.11e-86PREDICTED: transcription factor HEC2-like
TrEMBLA0A1J6HTC63e-85A0A1J6HTC6_NICAT; Transcription factor hec2
STRINGXP_009766851.17e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-48bHLH family protein