PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01078g00001.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 238aa    MW: 26139.9 Da    PI: 9.2075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01078g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.4e-42491481100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lqq
  Peaxi162Scf01078g00001.1  49 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVSESQRADAANSLVYEANVRLRDPVYGCMGAISALQQ 133
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+ael+++++e
  Peaxi162Scf01078g00001.1 134 QVQTLQAELNAVRSE 148
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.80348149IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4249146IPR004883Lateral organ boundaries, LOB
PRINTSPR000495.7E-6131147IPR017987Wilm's tumour protein
PRINTSPR000495.7E-6181195IPR017987Wilm's tumour protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSRERERLDE IGKKFKKEMD ASTQQLHMQQ MARRHILGPP GTTLNTITPC AACKLLRRRC  60
AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKMLMEVSES QRADAANSLV YEANVRLRDP  120
VYGCMGAISA LQQQVQTLQA ELNAVRSEIL RYKYREAANT LIASTHATLI STVAELPQAP  180
PTPTPPPPPP PPPPPPPSVV VVVTSSSPSP APSNLYTPTS RARPNFSAIP NNNIPYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-44421594121LOB family transfactor Ramosa2.1
5ly0_B1e-44421594121LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091071.11e-108LOB domain-containing protein 15-like isoform X2
SwissprotQ9AT612e-81LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A1U8H0621e-106A0A1U8H062_CAPAN; LOB domain-containing protein 15
STRINGSolyc06g082430.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-83LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]