PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01079g00216.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 331aa MW: 36441 Da PI: 7.209

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01079g00216.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.2	5e-69	109	262	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkq 83 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++ +++ +++++k+kr+ + ++ Peaxi162Scf01079g00216.1 109 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSSLQQDEGNQQnlqlSRDDNKHKRQREDPSA 193 5789***************************************************9998887778876777777777777889 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+l +t+l+s++s l++ ++P++vss+a f cvr+ssv+d+e++laYq+av+i+Gh+fkGiLydqG+e+ Peaxi162Scf01079g00216.1 194 SSLVCTRLPSNTSG--LQVGKFPAKVSSNAEFNCVRMSSVEDAEDQLAYQAAVNISGHIFKGILYDQGPES 262 99999999999765..88999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.9E-65	111	261	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	113	155	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-25	212	260	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MANFFSLGGG GTNSQEQQQE ISNSHRTNNQ LTEIGPENWF LYRNNDNQEI PTYKGFELWQ 60 TTPEQQQQQQ PQQFRHPIYP LQDLYSTAVG LGDHEASRSA GFVMMRSGGG GISCQDCGNQ 120 AKKDCQHMRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLSSLQQDEG NQQNLQLSRD 180 DNKHKRQRED PSASSLVCTR LPSNTSGLQV GKFPAKVSSN AEFNCVRMSS VEDAEDQLAY 240 QAAVNISGHI FKGILYDQGP ESQYITTGDT SSGGGSGSAG FQHHQNSAVV TTANGGNAAA 300 EASNYLDPSL FPVPRTNFMA GTQFFPSPKS P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	KHKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331913	0.0	KC331913.1 Petunia x hybrida expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788499.1	1e-155	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
Swissprot	K4B6C9	1e-135	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	U5L3P6	0.0	U5L3P6_PETHY; Expression of terpenoids 1
STRING	XP_009788493.1	1e-152	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]