PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01100g00115.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 98aa    MW: 11467 Da    PI: 8.2093
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01100g00115.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP26.61.6e-085172223
                              -SSTT-----TT--HHHHHTT- CS
                       SBP  2 CqvegCeadlseakeyhrrhkv 23
                              Cqve+C+ad++++k y+rrhk 
  Peaxi162Scf01100g00115.1 51 CQVEQCTADMADVKPYYRRHKW 72
                              ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-84571IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-74975IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MEINRWEGKR SMNDVEEEED DDNLEEDNKR KRVLILSERK LFGGGPAQPS CQVEQCTADM  60
ADVKPYYRRH KWTPAAILSA MKQWKNFVKQ LLAPKKNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0733011e-51LC073301.1 Nicotiana tabacum NtabSPL3b mRNA for squamosa promoter binding protein NtabSPL3b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770686.11e-30squamosa promoter-binding protein 1 isoform X4
TrEMBLA0A2K9ZXH24e-46A0A2K9ZXH2_PETHY; Squamosa promoter binding-like protein CNR
STRINGSolyc02g077920.2.11e-29(Solanum lycopersicum)