PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01110g00011.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 347aa    MW: 38841.9 Da    PI: 9.0176
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01110g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.4e-181050242
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              +i+n++ r+ +f kRr+g+lKKA+E+ +LCd++++ i++s+
  Peaxi162Scf01110g00011.1 10 FINNDTERKASFKKRRKGLLKKAHEIKTLCDVDICAILYSP 50
                              89*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516149IPR002100Transcription factor, MADS-box
CDDcd002663.54E-16285No hitNo description
SuperFamilySSF554551.26E-24296IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-11323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-171050IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTRKKVKLAF INNDTERKAS FKKRRKGLLK KAHEIKTLCD VDICAILYSP YHCDPEVFPS  60
HDGVLETIKK FRELPEMEQT KKMMNQEGFL RQRIKKVDDQ IRKIRKENRI REFTNMMYAM  120
MGGQQLAQNM HPYDLNDLGF VISQRIKEAE AILEEQRKEG SVAVPQPSSG PVGPGGSNYP  180
KEPLAPGRTS YFQEPRAPLM VPPISVVPPM ADPSMVPPIM ARPSFALPPP VPQPMNPPTL  240
SPLTMTPQTF PPMVSQMISP MPQPPKAPRV VPPTPPPVTF PMTPLLDSPI NPPVVESDYH  300
QNNRYAFPDS PSLPEGMSFD DALMNFVNGT TSSSIDQDPS SSNNKDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFINNDTERKASFKKRR
22125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625294.15e-77PREDICTED: proline-rich protein 36-like
TrEMBLA0A1S3YEZ32e-63A0A1S3YEZ3_TOBAC; vegetative cell wall protein gp1-like
TrEMBLA0A314LD675e-63A0A314LD67_NICAT; Agamous-like mads-box protein agl80
STRINGXP_009597191.11e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-40AGAMOUS-like 80