PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01133g00017.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 471aa MW: 52056.3 Da PI: 6.9383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01133g00017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	328	375	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peaxi162Scf01133g00017.1 328 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.68E-17	322	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.57E-10	322	379	No hit	No description
PROSITE profile	PS50888	15.389	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	326	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	328	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-11	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MDKDYFSNGA ILPPLQFEPM IPLSSLHSQQ ELNSITVQSS NSFPNTHWDN NSTEQYTHFN 60 SALSSIVSSP VASNSLNSNS LGLQELIGKL GTICGPYDNS NINNNINSDS TMTSCYTTPL 120 NSPPKLHIPI IDQLGKSNIS ILGNAVPMNP ASFPNHSADP RFTHRAAKLS CLGSRSFNDR 180 TSQAGLNNEN LPRVSSSPSL KKIGSPIQNQ NLGQLHVEKN CARIERNANC NEESSISEQV 240 PSELSCRKRK AVSRGKGKKN GKSLVGNVVE AEDGSREKIS KSTEDKMEES KGSEGDETEK 300 EAKEKEKVVE PPKDYIHVRA RRGEATDSHS LAERVRREKI SQRMKLLQDL VPGCNKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLASVNP RLDFHIDNLL PKDICQLNGS LSQHVPLNGY 420 VENLTQFPTI CEDDLQSIVQ MGFSQNSNQD LTLHSQTFSV PNSTSYMKIE M

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MDKDYFSNGA ILPPLQFEPM IPLSSLHSQQ ELNSITVQSS NSFPNTHWDN NSTEQYTHFN  60
SALSSIVSSP VASNSLNSNS LGLQELIGKL GTICGPYDNS NINNNINSDS TMTSCYTTPL  120
NSPPKLHIPI IDQLGKSNIS ILGNAVPMNP ASFPNHSADP RFTHRAAKLS CLGSRSFNDR  180
TSQAGLNNEN LPRVSSSPSL KKIGSPIQNQ NLGQLHVEKN CARIERNANC NEESSISEQV  240
PSELSCRKRK AVSRGKGKKN GKSLVGNVVE AEDGSREKIS KSTEDKMEES KGSEGDETEK  300
EAKEKEKVVE PPKDYIHVRA RRGEATDSHS LAERVRREKI SQRMKLLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLASVNP RLDFHIDNLL PKDICQLNGS LSQHVPLNGY  420
VENLTQFPTI CEDDLQSIVQ MGFSQNSNQD LTLHSQTFSV PNSTSYMKIE M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016506308.1	0.0	PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBL	A0A1S4CYT5	0.0	A0A1S4CYT5_TOBAC; transcription factor bHLH62-like isoform X1
STRING	XP_009596972.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-76	bHLH family protein