PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01153g00036.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 293aa MW: 33149.9 Da PI: 8.4234

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01153g00036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.4	1.6e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+v+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Peaxi162Scf01153g00036.1 15 LPPGFRFHPTDEELIVHYLKKKAASAPLPV-NIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 98 79**************************.89***********99999**************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk++++ ++++vg+kk Lvfy+g+ pkg kt+Wvmheyrl Peaxi162Scf01153g00036.1 99 TGTDKPIFTCnGTKKVGVKKALVFYRGKPPKGIKTNWVMHEYRL 142 ***98757788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-66	8	169	IPR003441	NAC domain
PROSITE profile	PS51005	63.42	15	168	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MENTGLMSSS NHLHLPPGFR FHPTDEELIV HYLKKKAASA PLPVNIIAEV DLYKFDPWEL 60 PSKANFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFTCNG TKKVGVKKAL 120 VFYRGKPPKG IKTNWVMHEY RLVDNNSSLT KKGSLRLDDW VLCRIYKKNS SSAVVEMDKE 180 DSVEDTTCSP TMPSSSINVF EQNPNTSALR GSSFDEFFEN DGDNYFGNRS APITSSGSQV 240 DNFMNIPMNS ASSKRIHSEN DNDMDGNSSS FHSMLYQNSP RNSQLNSWFS SYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-77	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-77	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-77	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-77	11	172	13	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-77	11	172	16	172	NAC domain-containing protein 19
3swm_B	1e-77	11	172	16	172	NAC domain-containing protein 19
3swm_C	1e-77	11	172	16	172	NAC domain-containing protein 19
3swm_D	1e-77	11	172	16	172	NAC domain-containing protein 19
3swp_A	1e-77	11	172	16	172	NAC domain-containing protein 19
3swp_B	1e-77	11	172	16	172	NAC domain-containing protein 19
3swp_C	1e-77	11	172	16	172	NAC domain-containing protein 19
3swp_D	1e-77	11	172	16	172	NAC domain-containing protein 19
4dul_A	2e-77	11	172	13	169	NAC domain-containing protein 19
4dul_B	2e-77	11	172	13	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF509875	1e-171	AF509875.1 Petunia x hybrida nam-like protein 12 (NH12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780447.1	1e-152	PREDICTED: NAC transcription factor 25-like
Refseq	XP_016488493.1	1e-152	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GY42	4e-99	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A1S4BHZ5	1e-150	A0A1S4BHZ5_TOBAC; NAC transcription factor 25-like
TrEMBL	A0A1U7WKF9	1e-150	A0A1U7WKF9_NICSY; NAC transcription factor 25-like
STRING	XP_009780447.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-101	NAC domain containing protein 25