PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01167g00015.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 246aa    MW: 27697 Da    PI: 5.0716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01167g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-194090155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  Peaxi162Scf01167g00015.1 40 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 90
                              6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-134090IPR001471AP2/ERF domain
CDDcd000181.93E-2740102No hitNo description
SuperFamilySSF541712.03E-184193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-2641102IPR001471AP2/ERF domain
PROSITE profilePS5103220.09941103IPR001471AP2/ERF domain
SMARTSM003809.0E-2841109IPR001471AP2/ERF domain
PRINTSPR003678.9E-94253IPR001471AP2/ERF domain
PRINTSPR003678.9E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFMKSSIPS STNKNTKPKK NGSNVSTQSG KQNAEEQNNC RYLGVRRRPW GRYAAEIRDP  60
NTKERHWLGT FDTAEEAALA YDRAARSMRS NNKSNKPTRT NFYYNPNYGM HVEESYRYDS  120
NNTTSTELPP LPEDITSSGN CYYYSDQVDQ ASQIPITATS SVSDMGYSST GLLNDMMPMD  180
FGTTNEYQYG MTYGEVGSTA TTTSSTTSGS YNSFGFNDWL QPQQSLQCSS KTMQDDTNNS  240
LSYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1742101667ATERF1
3gcc_A2e-1742101667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313171.17e-71ethylene-responsive transcription factor LEP-like
TrEMBLA0A1J6IY264e-52A0A1J6IY26_NICAT; Ethylene-responsive transcription factor lep
STRINGXP_009598690.13e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-22ERF family protein