PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01168g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 827aa    MW: 92332.6 Da    PI: 6.8219
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01168g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.3e-24128229199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD 
  Peaxi162Scf01168g00016.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 211
                               99*****************************7333.34459******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               ++F   + +++el+v+v+r+
  Peaxi162Scf01168g00016.1 212 FIFL--RGENGELRVGVRRA 229
                               ****..449999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-40124257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41125243IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-22126228No hitNo description
PfamPF023621.1E-21128229IPR003340B3 DNA binding domain
SMARTSM010192.0E-23128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012128230IPR003340B3 DNA binding domain
PfamPF065073.2E-36254336IPR010525Auxin response factor
PfamPF023097.4E-11698788IPR033389AUX/IAA domain
SuperFamilySSF542773.24E-12699778No hitNo description
PROSITE profilePS5174524.792701785IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MATSDSGRNA PGTGTVDAEK ALYTELWRAC AGPLVTVPQE GELVFYFPQG HIEQVEASTN  60
QASDQQMPVY NLPAKILCRV INVLLKAEPD TDEVYAQVTL MPEPNQDENA VPKEPTPPPP  120
PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGNEWRF  180
RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV  240
ISSHSMHLGV LATAWHAIQT KTMFTVYYKP RTSPAEFIVP YDQYMESVKS NHSIGMRFKM  300
RFEGEEAPEQ RYTGTVVGIE DADPKRWPKS KWRYLKVRWD ETSAIPRPDR VSPWKIEPAL  360
SHPSLNPLPI PRPKRPRSNV LPSSPDSSVL TREGSSKITA GPSQARGFSR VLQGQEVSTL  420
RGSFVESNES DSSQKPIVWP PLLDDEKSDV HSASKRYQSD NWLPLGRHES SFKDLLAGFG  480
VQGNSSHGLH LASDDQTALP ATRQALDNEK DFSLLGKKWS LASSGLSLNL MDSGLKGADT  540
PYQMRGTARC NGFNEYQTLP GHRIDHQQGN WLRPQFVLPF YQMSTHSGEM MPKPMASLRH  600
EAVKPKEGNC KLFGIPLGSN SAAVDPVMLQ KVSSIDSASN MHFSVHPHQF PTIESDQRSE  660
QLKGSKILDD GLTVNDQEKQ FQTSHLGTTD REGKGHINST RSCTKVHKQG TALGRSVDLA  720
KFNNYEELIA ELDHLFDFDG ELKSRNKNWL VVYTDDEGDM MLVGDDPWQE FCGMVRKIFI  780
YTKEEVQQMN PGTLNSNGED NSSIREGSDA KEVKNVQLPS DSSPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17513621358Auxin response factor 1
4ldw_A1e-17513621358Auxin response factor 1
4ldw_B1e-17513621358Auxin response factor 1
4ldx_A1e-17513621358Auxin response factor 1
4ldx_B1e-17513621358Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466716.10.0PREDICTED: auxin response factor 2-like isoform X1
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A1S3ZQQ90.0A0A1S3ZQQ9_TOBAC; Auxin response factor
STRINGXP_009592683.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]