PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01198g00316.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 232aa    MW: 26421 Da    PI: 8.2002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01198g00316.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.65.9e-15134223898
                               -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                        B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                               s+++ks   +l +  +fa+++ ++  +   l+l+ +   sW vk+   ++ ++  +t+GWk Fv +n+Lk gD +vF++++  ++
  Peaxi162Scf01198g00316.1 134 SYAFKSknPLLPIQLTFARKCFEE--NYSYLMLRVQGRGSWPVKC--YRGTKKARITTGWKVFVLDNKLKCGDACVFEVIKGtDQ 214
                               666666213455666789999544..333799999999*******..77777889***********************9966466 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                                   v++fr
  Peaxi162Scf01198g00316.1 215 LFIDVTIFR 223
                               666677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.04E-12123223No hitNo description
PROSITE profilePS5086311.265129225IPR003340B3 DNA binding domain
PfamPF023622.5E-12134221IPR003340B3 DNA binding domain
SMARTSM010190.0024136225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17143225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-15143225IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGLLNEAHGT HTIESDDSVE ILEGIPISSG RKVKKSDMVE NCVENIGHCP LRQSSKRERE  60
EDNAEADVSS VDIHIKRVEV EKSQEDIASH PFSRKGQKSS DGCKMQEQQY KIAYDWNQKV  120
RDKVLSAAYQ RANSYAFKSK NPLLPIQLTF ARKCFEENYS YLMLRVQGRG SWPVKCYRGT  180
KKARITTGWK VFVLDNKLKC GDACVFEVIK GTDQLFIDVT IFREDGNTPN MC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613660.13e-75PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_009613661.12e-75PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
RefseqXP_016490750.12e-75PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
RefseqXP_018629844.12e-75PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A1S4BPD78e-74A0A1S4BPD7_TOBAC; putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A1S4BPF65e-74A0A1S4BPF6_TOBAC; B3 domain-containing protein Os03g0619600-like isoform X3
TrEMBLA0A1S4BPH58e-74A0A1S4BPH5_TOBAC; putative B3 domain-containing protein Os03g0621600 isoform X1
STRINGXP_009613660.11e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-10related to vernalization1 1