PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01312g00064.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 352aa    MW: 40563.6 Da    PI: 10.2344
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01312g00064.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.2e-102823102351
                               HHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  23 KAeELSvLCdaevaviifsstgklyeyss 51 
                               K  ELS+LC+++++ ii s++g+l+++++
  Peaxi162Scf01312g00064.1 282 KNMELSTLCGIKACTIITSPEGELQTWPK 310
                               778************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006603.4E-126181IPR000133ER lumen protein retaining receptor
PfamPF008102.1E-3361200IPR000133ER lumen protein retaining receptor
PRINTSPR006603.4E-12152172IPR000133ER lumen protein retaining receptor
PRINTSPR006603.4E-12174188IPR000133ER lumen protein retaining receptor
PRINTSPR006603.4E-12188206IPR000133ER lumen protein retaining receptor
SuperFamilySSF554552.62E-9270340IPR002100Transcription factor, MADS-box
PfamPF003196.0E-6282308IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006621Biological Processprotein retention in ER lumen
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046923Molecular FunctionER retention sequence binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGQKGVQSPV KKMFSWIRKQ SKKVKIFLGL ITVISLIVTL KLLIHDHNYF FVMAEAIHLI  60
GLSLKTQVLT AIFLAVRLYC SFIMEADIHT VLDFITLVAT VWIIYMMKFK LKSSYMADLD  120
NMPLYYPIVP AAVIAFFVHP TTSHLLVNRM LWAFCVYLES VSVLPQLRLM QNVQIIEPFS  180
AHYVFALGVA RFLGCAHWII QVYETAGAYI YLAGRGYFWI PMVFLAEIVQ TFILADFCYY  240
YVKSVMSGQL IVRLPTPVRK LKQEANKQPQ NFSSEKRMYK EKNMELSTLC GIKACTIITS  300
PEGELQTWPK NLEVKAVLDM YTQTQSPNKK AKQSEIQKKR KKKKNKKGRK IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6i6h_A1e-196124931206ER lumen protein-retaining receptor 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337341KKRKK
2337343KKRKKKK
3338346KRKKKKNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-75HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242419.11e-172putative ER lumen protein-retaining receptor C28H8.4
RefseqXP_015077871.11e-172putative ER lumen protein-retaining receptor C28H8.4
TrEMBLA0A3Q7H2F31e-170A0A3Q7H2F3_SOLLC; Uncharacterized protein
STRINGSolyc06g083270.2.11e-171(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.12e-06AGAMOUS-like 76