PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01314g00012.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 198aa    MW: 22278.4 Da    PI: 7.7846
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01314g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Peaxi162Scf01314g00012.1 14 KGPWSPEEDAKLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.312966IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-201261IPR009057Homeodomain-like
SMARTSM007173.9E-121364IPR001005SANT/Myb domain
PfamPF002493.5E-151462IPR001005SANT/Myb domain
SuperFamilySSF466895.78E-181586IPR009057Homeodomain-like
CDDcd001675.01E-101662No hitNo description
Gene3DG3DSA:1.10.10.604.8E-56284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRAPCCDRS SVKKGPWSPE EDAKLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNVKHGG FSEEEDRIIC SLYIILQPIP YSDYEPRLNG ASIRKLLIKL GGKFSEDDQP  120
ISGEQDPQYP MNNSIISMHS IYENPINLIS SPLDVLNAQY NMNHGTALTT SPLQGNFTAE  180
RMICNINSQK LGDLEFFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755164e-41HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362138.11e-54transcription factor RAX3-like
TrEMBLA0A0A0LX581e-52A0A0A0LX58_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-54myb domain protein 84