PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01324g00011.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 238aa    MW: 27738.2 Da    PI: 8.7339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01324g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.81.1e-6632237123336
                      GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
                               lQWp+L+q+LasRp++p + RiTg+g+    sk+ l  +g+rLa+f e+l++ fefn+ +++rl+d++l++L+vk+gE +aVn+v
  Peaxi162Scf01324g00011.1  32 LQWPSLFQSLASRPNPPIHARITGIGE----SKQDLIDIGDRLAEFVEALNLAFEFNL-IVDRLKDVRLWMLHVKEGEIVAVNCV 111
                               8**************************....9*************************9.7************************* PP

                      GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                               lq+h++l +s       +++L l++s++ +++ ++eqea+hn++s+ +r++++l+yy+++f s+  +lp es+ r k+E++ ++r
  Peaxi162Scf01324g00011.1 112 LQMHKILYDSSGGIL--RDFLGLIRSTNRTIILMAEQEAEHNEPSLEARLFNSLKYYAVVFYSIGFSLPLESSVRFKIEEM-FAR 193
                               ******966655444..79**************************************************************.*** PP

                      GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                               ei+n+++ceg++r+ rhe ++kWr+ +++ GF+ + +se ++ q
  Peaxi162Scf01324g00011.1 194 EIRNIISCEGRNRIGRHECFGKWRKLMKQGGFRCIGVSEMEMLQ 237
                               ***************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.5791238IPR005202Transcription factor GRAS
PfamPF035143.8E-6432237IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRLIQWVGIQ WNRCTSWEQQ QEYLTRRAKA RLQWPSLFQS LASRPNPPIH ARITGIGESK  60
QDLIDIGDRL AEFVEALNLA FEFNLIVDRL KDVRLWMLHV KEGEIVAVNC VLQMHKILYD  120
SSGGILRDFL GLIRSTNRTI ILMAEQEAEH NEPSLEARLF NSLKYYAVVF YSIGFSLPLE  180
SSVRFKIEEM FAREIRNIIS CEGRNRIGRH ECFGKWRKLM KQGGFRCIGV SEMEMLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2932231141335Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502025.11e-125PREDICTED: scarecrow-like protein 28, partial
RefseqXP_018628640.11e-124PREDICTED: scarecrow-like protein 28 isoform X2
RefseqXP_019238297.11e-123PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN31e-87SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1J6JVQ61e-122A0A1J6JVQ6_NICAT; Scarecrow-like protein 28
TrEMBLA0A1S4CLM71e-123A0A1S4CLM7_TOBAC; scarecrow-like protein 28
STRINGPGSC0003DMT4000078791e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.15e-90GRAS family protein