PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01327g00121.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 522aa MW: 59107.1 Da PI: 6.3392

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01327g00121.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	71.9	1.6e-22	7	125	7	128
NAM 7 Fh.PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 F+ P+d+elv++ L k v+gk++++ + i+ +d+y+ +Pw+L ++ ++k yfF++ +kk++t++r +r++ +g W ++ k k Peaxi162Scf01327g00121.1 7 FRpPSDSELVMK-LLKFVAGKSFPE-TEIAFADVYSKQPWQLIGEC--SKKTHYFFTQLKKKKSTDSRFKRTMGDGSWTQQDKGK 87 55279***88.667899999999.66**********8443..66889**************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++ ++g k++L + +r+ ++ + +W+m+ey l Peaxi162Scf01327g00121.1 88 PILDEdENLVIGYKRSLSYK-NRKDSSLNGRWMMKEYFL 125 8455569***97.7888889*******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.394	1	151	IPR003441	NAC domain
Pfam	PF02365	4.2E-10	7	124	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-23	10	150	IPR003441	NAC domain
Pfam	PF00174	9.2E-23	248	368	IPR000572	Oxidoreductase, molybdopterin-binding domain
Gene3D	G3DSA:3.90.420.10	1.8E-30	249	390	IPR000572	Oxidoreductase, molybdopterin-binding domain
SuperFamily	SSF56524	1.83E-31	250	392	IPR000572	Oxidoreductase, molybdopterin-binding domain
Pfam	PF03404	6.2E-35	393	520	IPR005066	Moybdenum cofactor oxidoreductase, dimerisation
SuperFamily	SSF81296	2.24E-34	396	521	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.650	2.9E-36	397	521	IPR005066	Moybdenum cofactor oxidoreductase, dimerisation

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042128	Biological Process	nitrate assimilation
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0030151	Molecular Function	molybdenum ion binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MENNLQFRPP SDSELVMKLL KFVAGKSFPE TEIAFADVYS KQPWQLIGEC SKKTHYFFTQ 60 LKKKKSTDSR FKRTMGDGSW TQQDKGKPIL DEDENLVIGY KRSLSYKNRK DSSLNGRWMM 120 KEYFLADFLL NELKSKNNEA KDFVICAIKK NPRSQVKGNN VPSDDVNEYK KFIARVLQES 180 VNVQPLFSEQ SMVSETPSAS YDVNQTYSND LFVENREFYE EGDWISLLDF ADDDLVPKNC 240 LLSNSGELMA VWGGVKLADV LELVGIPYLT SVTKSGGKHV EFVSIDKCKE ENGGPYTNPE 300 ADVLLAYEMN GELLVLHHAI LTLLGSRVKT LNRDHGYPLR VVVPGVIGAR SVKWVDSINI 360 IAEECQGFFM QKDYKTFPPT VNRDNINWST RRPQMDFPVQ CAICSLEDVS VVKHGKITIK 420 GYAVSGWGRG IERVDISIDG GKTWVEATRY QRTGIPYIAD HSTSDKWAWV FFEAEANIPQ 480 SAEIVAKAVD ISANVQPESI DSIWNLRGIL NTSWHRVQVR VG

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MENNLQFRPP SDSELVMKLL KFVAGKSFPE TEIAFADVYS KQPWQLIGEC SKKTHYFFTQ  60
LKKKKSTDSR FKRTMGDGSW TQQDKGKPIL DEDENLVIGY KRSLSYKNRK DSSLNGRWMM  120
KEYFLADFLL NELKSKNNEA KDFVICAIKK NPRSQVKGNN VPSDDVNEYK KFIARVLQES  180
VNVQPLFSEQ SMVSETPSAS YDVNQTYSND LFVENREFYE EGDWISLLDF ADDDLVPKNC  240
LLSNSGELMA VWGGVKLADV LELVGIPYLT SVTKSGGKHV EFVSIDKCKE ENGGPYTNPE  300
ADVLLAYEMN GELLVLHHAI LTLLGSRVKT LNRDHGYPLR VVVPGVIGAR SVKWVDSINI  360
IAEECQGFFM QKDYKTFPPT VNRDNINWST RRPQMDFPVQ CAICSLEDVS VVKHGKITIK  420
GYAVSGWGRG IERVDISIDG GKTWVEATRY QRTGIPYIAD HSTSDKWAWV FFEAEANIPQ  480
SAEIVAKAVD ISANVQPESI DSIWNLRGIL NTSWHRVQVR VG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ogp_A	1e-142	250	522	125	389	SULFITE OXIDASE
1ogp_B	1e-142	250	522	125	389	SULFITE OXIDASE
1ogp_C	1e-142	250	522	125	389	SULFITE OXIDASE
1ogp_D	1e-142	250	522	125	389	SULFITE OXIDASE
1ogp_E	1e-142	250	522	125	389	SULFITE OXIDASE
1ogp_F	1e-142	250	522	125	389	SULFITE OXIDASE
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably involved in sulfite oxidative detoxification.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF701479	0.0	KF701479.1 Nicotiana tabacum sulfite oxidase (SO) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225942.1	1e-168	PREDICTED: sulfite oxidase
Swissprot	Q9S850	1e-142	SUOX_ARATH; Sulfite oxidase
TrEMBL	A0A1J6J868	1e-167	A0A1J6J868_NICAT; Sulfite oxidase
STRING	XP_009784618.1	1e-166	(Nicotiana sylvestris)
STRING	PGSC0003DMT400052064	1e-166	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25513	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	9e-13	NAC domain containing protein 2

Publications ? help Back to Top
Eilers T, et al. Identification and biochemical characterization of Arabidopsis thaliana sulfite oxidase. A new player in plant sulfur metabolism. J. Biol. Chem., 2001. 276(50): p. 46989-94 [PMID:11598126] Nakamura T,Meyer C,Sano H Molecular cloning and characterization of plant genes encoding novel peroxisomal molybdoenzymes of the sulphite oxidase family. J. Exp. Bot., 2002. 53(375): p. 1833-6 [PMID:12147736] Hille R Plants have SOX: the structure of sulfite oxidase from Arabidopsis thaliana. Structure, 2003. 11(10): p. 1189-90 [PMID:14527382] Schrader N, et al. The crystal structure of plant sulfite oxidase provides insights into sulfite oxidation in plants and animals. Structure, 2003. 11(10): p. 1251-63 [PMID:14527393] Goyer A, et al. Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis. J. Biol. Chem., 2004. 279(17): p. 16947-53 [PMID:14766747] Nowak K, et al. Peroxisomal localization of sulfite oxidase separates it from chloroplast-based sulfur assimilation. Plant Cell Physiol., 2004. 45(12): p. 1889-94 [PMID:15653809] Astashkin AV, et al. Structures of the Mo(V) forms of sulfite oxidase from Arabidopsis thaliana by pulsed EPR spectroscopy. Biochemistry, 2005. 44(40): p. 13274-81 [PMID:16201753] Hemann C, et al. Spectroscopic and kinetic studies of Arabidopsis thaliana sulfite oxidase: nature of the redox-active orbital and electronic structure contributions to catalysis. J. Am. Chem. Soc., 2005. 127(47): p. 16567-77 [PMID:16305246] Hänsch R, et al. Plant sulfite oxidase as novel producer of H2O2: combination of enzyme catalysis with a subsequent non-enzymatic reaction step. J. Biol. Chem., 2006. 281(10): p. 6884-8 [PMID:16407262] Lang C, et al. Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide. Plant Cell Environ., 2007. 30(4): p. 447-55 [PMID:17324231] Brychkova G, et al. Sulfite oxidase protects plants against sulfur dioxide toxicity. Plant J., 2007. 50(4): p. 696-709 [PMID:17425719] Feng C,Tollin G,Enemark JH Sulfite oxidizing enzymes. Biochim. Biophys. Acta, 2007. 1774(5): p. 527-39 [PMID:17459792] Hänsch R,Lang C,Rennenberg H,Mendel RR Significance of plant sulfite oxidase. Plant Biol (Stuttg), 2007. 9(5): p. 589-95 [PMID:17853359] Reumann S, et al. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell, 2007. 19(10): p. 3170-93 [PMID:17951448] Xia ZL,Wang MP,Liu QJ Isolation and functional analysis of sulfite oxidase gene AtSO promoter from Arabidopsis thaliana. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao, 2007. 33(5): p. 369-74 [PMID:17960039] Astashkin AV, et al. Direct demonstration of the presence of coordinated sulfate in the reaction pathway of Arabidopsis thaliana sulfite oxidase using 33S labeling and ESEEM spectroscopy. J. Am. Chem. Soc., 2007. 129(47): p. 14800-10 [PMID:17983221] Byrne RS,Hänsch R,Mendel RR,Hille R Oxidative half-reaction of arabidopsis thaliana sulfite oxidase: generation of superoxide by a peroxisomal enzyme. J. Biol. Chem., 2009. 284(51): p. 35479-84 [PMID:19875441] Teschner J, et al. A novel role for Arabidopsis mitochondrial ABC transporter ATM3 in molybdenum cofactor biosynthesis. Plant Cell, 2010. 22(2): p. 468-80 [PMID:20164445] Ahmad A,Sarfraz A Screening and partial immunochemical characterization of sulfite oxidase from plant source. Indian J. Exp. Biol., 2010. 48(1): p. 83-6 [PMID:20358871] Randewig D, et al. Sulfite oxidase controls sulfur metabolism under SO2 exposure in Arabidopsis thaliana. Plant Cell Environ., 2012. 35(1): p. 100-15 [PMID:21895698] Qiu JA,Wilson HL,Rajagopalan KV Structure-based alteration of substrate specificity and catalytic activity of sulfite oxidase from sulfite oxidation to nitrate reduction. Biochemistry, 2012. 51(6): p. 1134-47 [PMID:22263579] Birke H, et al. Cysteine biosynthesis, in concert with a novel mechanism, contributes to sulfide detoxification in mitochondria of Arabidopsis thaliana. Biochem. J., 2012. 445(2): p. 275-83 [PMID:22551219] Hamisch D, et al. Impact of SO(2) on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing. New Phytol., 2012. 196(4): p. 1074-85 [PMID:23025405] Yarmolinsky D,Brychkova G,Fluhr R,Sagi M Sulfite reductase protects plants against sulfite toxicity. Plant Physiol., 2013. 161(2): p. 725-43 [PMID:23221833] Birke H,De Kok LJ,Wirtz M,Hell R The role of compartment-specific cysteine synthesis for sulfur homeostasis during H2S exposure in Arabidopsis. Plant Cell Physiol., 2015. 56(2): p. 358-67 [PMID:25416292] Filiz E,Vatansever R,Ozyigit II Insights into a key sulfite scavenger enzyme sulfite oxidase (SOX) gene in plants. Physiol Mol Biol Plants, 2017. 23(2): p. 385-395 [PMID:28461726]