PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01340g00002.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 147aa    MW: 16536.3 Da    PI: 8.9707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01340g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12601351488
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                                 + +p +f+ ++ +   +++t++l  +sg+s  v l+++ ++++    +t+G k   + n+Lk+gD+++F+ld++ +
  Peaxi162Scf01340g00002.1  60 PFMHIPMEFCHSNALF--KNTTIRLIGPSGESCHVSLRICSGGKTlyACMTTGLKVLFSRNELKVGDICIFQLDRTrN 135
                               4589*********877..4569***************66555555888899*********************997533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1342134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1345133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-1046133No hitNo description
PfamPF023624.8E-1061136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MNFSIILLDS AGCDKKSLKL EDVEREVPSR VKKPKFADCS KGSSEFTARI KEYNIRKRSP  60
FMHIPMEFCH SNALFKNTTI RLIGPSGESC HVSLRICSGG KTLYACMTTG LKVLFSRNEL  120
KVGDICIFQL DRTRNDSTSI TMDVCVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619629.12e-67PREDICTED: putative B3 domain-containing protein REM15
RefseqXP_018631640.12e-67PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A1S3X5P53e-65A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1
STRINGXP_009619629.19e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630