PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01425g00113.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 403aa MW: 46652.3 Da PI: 8.9044

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01425g00113.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.2	2e-46	38	174	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pGfrFhPtdeelv +yL++kve+k e ik++diyk++PwdLpk +v+++ kewyf + r +ky+++ r+nr+t+sg+Wk Peaxi162Scf01425g00113.1 38 LPGFRFHPTDEELVGFYLRRKVENKLRMNMELIKQLDIYKYDPWDLPKvsTVAGDYKEWYFLCMRGRKYKNSVRPNRVTRSGFWK 122 69*******************998555599***********5446666888************************ PP NAM 85 atgkdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128 atg dk+++s+ + + +glkk Lv+y+g a kg+kt+W+mhe+rl Peaxi162Scf01425g00113.1 123 ATGIDKPIYSTtaT--KleslhhdcIGLKKCLVYYRGCAGKGTKTEWMMHEFRL 174 ******8550..345555666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-49	35	201	IPR003441	NAC domain
PROSITE profile	PS51005	50.24	37	202	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	39	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MNRVKKGQEN NSESMEVKQT EAAKSNIKDS DIEEEVILPG FRFHPTDEEL VGFYLRRKVE 60 NKLRMNMELI KQLDIYKYDP WDLPKVSTVA GDYKEWYFLC MRGRKYKNSV RPNRVTRSGF 120 WKATGIDKPI YSTTATKLES LHHDCIGLKK CLVYYRGCAG KGTKTEWMMH EFRLPVTWKT 180 TNHLPNTHHE AEVWTLCRIF KRTSNYKKYL PEVKHHISLS YGDASSKACS SLESENSSDD 240 HSTSFKNMSF QQENNNVENG EKQMDVRNHH FCISQQNAAS QSPFTSSSSS FWNTNSQEEY 300 LFCDGKWDEL KSIEVWTLCR IFKRTSNYKR YSPAVKHHIV SLSYGDASSK VCSSQESKTV 360 VTTTPPALKT CHFNKKTTTQ QTSQSPFTSS SSSFWNTNSL EDY

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MNRVKKGQEN NSESMEVKQT EAAKSNIKDS DIEEEVILPG FRFHPTDEEL VGFYLRRKVE  60
NKLRMNMELI KQLDIYKYDP WDLPKVSTVA GDYKEWYFLC MRGRKYKNSV RPNRVTRSGF  120
WKATGIDKPI YSTTATKLES LHHDCIGLKK CLVYYRGCAG KGTKTEWMMH EFRLPVTWKT  180
TNHLPNTHHE AEVWTLCRIF KRTSNYKKYL PEVKHHISLS YGDASSKACS SLESENSSDD  240
HSTSFKNMSF QQENNNVENG EKQMDVRNHH FCISQQNAAS QSPFTSSSSS FWNTNSQEEY  300
LFCDGKWDEL KSIEVWTLCR IFKRTSNYKR YSPAVKHHIV SLSYGDASSK VCSSQESKTV  360
VTTTPPALKT CHFNKKTTTQ QTSQSPFTSS SSSFWNTNSL EDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-43	28	208	5	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	4e-43	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621672.1	1e-148	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S3XIG2	1e-145	A0A1S3XIG2_TOBAC; transcription factor JUNGBRUNNEN 1-like
STRING	XP_009621672.1	1e-147	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-84	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]