PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01504g00001.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 146aa MW: 16652.1 Da PI: 9.7688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01504g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	39	124	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y+eYA +vGF +r+ +s+ks+r+g+i++r + C + ++ + ++++r r gC+a++ vk+ek g+w+v k++ +Hn Peaxi162Scf01504g00001.1 39 YYDEYAGRVGFMTRVLSSSKSERDGSIISRGLGCRGMLDNPRTGSF---ANQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHN 120 8*******************************877666666555...88899999************************ PP FAR1 87 Hela 90 H+l+ Peaxi162Scf01504g00001.1 121 HPLV 124 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-18	39	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MQIIEDKPVV GQVSTYDADR TQELYEGMTF ESEEAARAYY DEYAGRVGFM TRVLSSSKSE 60 RDGSIISRGL GCRGMLDNPR TGSFANQKRD RRRDGCTAMI LVKREKPGTW VVRKFVRDHN 120 HPLVISPSKR RPTFVSFLVL PCINML

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-125	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016478790.1	1e-79	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A1S4AQE7	3e-78	A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009605654.1	2e-78	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-23	FAR1 family protein