PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01626g00002.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 249aa MW: 28961.6 Da PI: 5.7801

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01626g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.4e-27	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklel 83 +fY +YAk++GF++r+++ ++s +n ++ r+fvCs+eg+r+ ++ +ker ++++tr gCka++++ ++ +kw+vtk++ Peaxi162Scf01626g00002.1 81 DFYYAYAKRTGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHAL-RKERVlpPKPVTREGCKAMMRLAARDGDKWVVTKFVA 164 6***************************************99988.33332459************************* PP FAR1 84 eHnHela 90 eHnH+l+ Peaxi162Scf01626g00002.1 165 EHNHKLM 171 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	81	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MASSDRHFLY DYDQGSDDDN FQRFSENEAN EDGLVLLHTC NAHDAQNDEL IFLEPAPNSS 60 HMEIIEPFTG MTFSSLDDAR DFYYAYAKRT GFTIRTNRIR HSLKNMAVIG RDFVCSREGF 120 RAAKHALRKE RVLPPKPVTR EGCKAMMRLA ARDGDKWVVT KFVAEHNHKL MTNCKFSGEL 180 PTINIVSEEE KDKKIHELHE ELQQERERSE AFRQQICNII SDLEEHAEFM TIRVEDIVNN 240 MRKIELGYV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309805.1	1e-122	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024461384.1	1e-122	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9HH50	1e-121	B9HH50_POPTR; Uncharacterized protein
STRING	POPTR_0007s01950.1	1e-122	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18960	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-32	FAR1 family protein