PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01688g00001.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 144aa    MW: 16581.1 Da    PI: 7.8458
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01688g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.31.2e-3351051101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aC++Ck++r++C ++C lapyfp +++++f+nv +lFG++n +kll++++++++ ++++sl+ eA++r ++Pv+G++++ +kl+ 
  Peaxi162Scf01688g00001.1   5 ACSVCKHQRKRCDENCQLAPYFPTSRAEDFQNVYRLFGVNNTIKLLSSVSDDQKGITVESLILEARIRKENPVHGCLAIERKLRA 89 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkeel 101
                               ++e +++el+ +++++
  Peaxi162Scf01688g00001.1  90 EIEAHEKELEIVRKQI 105
                               ***********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2444105IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-315102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MFVGACSVCK HQRKRCDENC QLAPYFPTSR AEDFQNVYRL FGVNNTIKLL SSVSDDQKGI  60
TVESLILEAR IRKENPVHGC LAIERKLRAE IEAHEKELEI VRKQIASCKK MTMLQMERQE  120
LEEQLNRSSL ALVSPTDAHH HDMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-18610512111LOB family transfactor Ramosa2.1
5ly0_B1e-18610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801618.12e-81PREDICTED: LOB domain-containing protein 22-like
RefseqXP_016471190.12e-81PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A1S4A3K44e-80A0A1S4A3K4_TOBAC; LOB domain-containing protein 22-like
TrEMBLA0A1U7YEQ34e-80A0A1U7YEQ3_NICSY; LOB domain-containing protein 22-like
STRINGXP_009801618.16e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-29LOB domain-containing protein 27