PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01723g00002.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 225aa    MW: 26321.4 Da    PI: 10.8347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01723g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-16123211598
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++++ +++ l++p++fa e  +++++  +++++d + rsW+ kl    +++r+++++GW++F+  n Lk +D ++F++++ ++
  Peaxi162Scf01723g00002.1 123 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWRKFCIVNCLKKRDRLMFEMVS-NG 202
                               57889999999*******9998555444.4999999.779******..999999*************************988.66 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               +++v++++ 
  Peaxi162Scf01723g00002.1 203 EKPVLRLYG 211
                               667887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.35162IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-9154IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-8152No hitNo description
Gene3DG3DSA:2.40.330.105.9E-8154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19114208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-19116208IPR015300DNA-binding pseudobarrel domain
CDDcd100175.81E-14118210No hitNo description
PROSITE profilePS5086311.702119213IPR003340B3 DNA binding domain
SMARTSM010195.1E-14120213IPR003340B3 DNA binding domain
PfamPF023621.4E-14123210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MILKDEAQRP WSGWIGRVSG RHFGIIRGWS KFRAANGLQV GDAYKFELIK NGKIPEAYFH  60
HLRGSPSLQP EGKKKDFDVK RISNKVLDSQ EKPESNIKKS RKVFPNVEAS KDMHLSHPHF  120
ICTIQPSSIS RHYLRVPRQF ALESCLNNRK CEIIVRDERR SWTCKLYTSG RRTYIGSGWR  180
KFCIVNCLKK RDRLMFEMVS NGEKPVLRLY GKQFGKDDKN HRSNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469444.19e-70PREDICTED: B3 domain-containing protein REM10-like isoform X4
RefseqXP_016469446.19e-70PREDICTED: putative B3 domain-containing protein REM15 isoform X6
TrEMBLA0A1S3ZYP12e-68A0A1S3ZYP1_TOBAC; B3 domain-containing protein REM10-like isoform X4
TrEMBLA0A1S3ZYS12e-68A0A1S3ZYS1_TOBAC; putative B3 domain-containing protein REM15 isoform X6
STRINGXP_009792889.11e-68(Nicotiana sylvestris)
STRINGXP_009597618.14e-67(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-18B3 family protein