PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf02095g00009.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27696.3 Da    PI: 9.6041
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf02095g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2071123456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               + ++t++qle Le++F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  Peaxi162Scf02095g00009.1  71 KKRLTNDQLESLENCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 123
                               5679************************************************9 PP
2HD-ZIP_I/II120.87e-3970161293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               kk+rl+++q+++LE++F+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+ yd +++e+++L++ev +
  Peaxi162Scf02095g00009.1  70 KKKRLTNDQLESLENCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKTKQLERLYDSLKQDYDIVSREKQKLQDEVLA 154
                               9************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               Lr+ lke
  Peaxi162Scf02095g00009.1 155 LRAILKE 161
                               **88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1956127IPR009057Homeodomain-like
PROSITE profilePS5007117.265125IPR001356Homeobox domain
SMARTSM003891.6E-1767129IPR001356Homeobox domain
PfamPF000468.3E-1870123IPR001356Homeobox domain
CDDcd000861.85E-1670126No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2172132IPR009057Homeodomain-like
PRINTSPR000317.1E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000317.1E-6105121IPR000047Helix-turn-helix motif
PfamPF021833.2E-7125159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
KKRGSKKMDW NGNFRPFVSR PAPPDNSLNF LYNYNYDQYP GMEMKHAMQT QHGGVLPTMD  60
KNNYANQLDK KKRLTNDQLE SLENCFQEEI KLDPDRKMKL AKELGLQPRQ IAVWFQNRRA  120
RWKTKQLERL YDSLKQDYDI VSREKQKLQD EVLALRAILK EQAATKKQVS TIYTEISGEE  180
TVESTSIPGP NKTRGTTSNY HQNNNMAADC SYVFNVNVDG FNPMNMPPYN WASLPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758049.11e-136PREDICTED: putative homeobox-leucine zipper protein ATHB-51
RefseqXP_016490887.11e-136PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR07e-58ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1S4BPS41e-135A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1U7V7341e-135A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51
STRINGXP_009758049.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-60homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]