PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf16989g00001.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YB

Protein Properties

Length: 82aa MW: 9409.15 Da PI: 4.3217

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf16989g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	60.7	3.4e-19	1	47	51	97
NF-YB 51 sdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 sdkc++e+r+t+ngdd++wal++lGf+ y+e++ yl k re+e+++ Peaxi162Scf16989g00001.1 1 SDKCHKENRRTVNGDDICWALSSLGFDSYAEAMIRYLYKLREFERQR 47 89******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.8E-19	1	73	IPR009072	Histone-fold
SuperFamily	SSF47113	2.79E-15	2	70	IPR009072	Histone-fold
PRINTS	PR00615	9.5E-7	4	22	No hit	No description
PRINTS	PR00615	9.5E-7	23	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
SDKCHKENRR TVNGDDICWA LSSLGFDSYA EAMIRYLYKL REFERQRANQ SKGSFNDDED 60 TDDEATSESE KQETTLSPPA PL

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233101.1	4e-43	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	9e-21	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A1J6KBZ1	1e-41	A0A1J6KBZ1_NICAT; Nuclear transcription factor y subunit b-4
STRING	XP_009760265.1	2e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-22	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]