PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf29147g00002.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 124aa    MW: 14588.1 Da    PI: 9.0673
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf29147g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-1218461846
                              HHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgkl 46
                              +  +KKA+ELSvLCd+  a+iifs++ k+
  Peaxi162Scf29147g00002.1 18 ANFFKKAQELSVLCDVGLAIIIFSPDEKI 46
                              568**********************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0033152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.199746IPR002100Transcription factor, MADS-box
PfamPF003198.8E-11846IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-14885IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASNTVSERN ALLHRKVANF FKKAQELSVL CDVGLAIIIF SPDEKIPIMW PSETKVRQIL  60
TSYLGHSEFQ RSKKLVLHEN YLREKLEARV EEIRKMEEKK EMEFLFNQLV MGMSIYDLDA  120
KQLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685131e-154FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344961.14e-34PREDICTED: agamous-like MADS-box protein AGL90
RefseqXP_015061001.14e-34agamous-like MADS-box protein AGL90
TrEMBLB6DT653e-73B6DT65_PETHY; Type I MADS box transcription factor (Fragment)
STRINGPGSC0003DMT4000850371e-33(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.14e-13AGAMOUS-like 92