PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg12685011g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 93aa    MW: 10968.4 Da    PI: 5.1692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg12685011g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.83.9e-311592179
                          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
                                 lppGfrFhPtdee++++yL++kv +k++++  +++evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+
  Peinf101Ctg12685011g00004.1 15 LPPGFRFHPTDEEIITCYLQEKVMDKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFCQRDRKYPTGMRTNRATE 92
                                 79*************************999.88***************99999***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-321193IPR003441NAC domain
PROSITE profilePS5100531.1191593IPR003441NAC domain
PfamPF023651.7E-131691IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MQVINQESDH DILNLPPGFR FHPTDEEIIT CYLQEKVMDK RFTAIAVAEV DLNKSEPWDL  60
PAKAKMGEKE WYFFCQRDRK YPTGMRTNRA TES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2913911391Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5102141e-110AF510214.1 Petunia x hybrida nam-like protein 17 (NH17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243180.12e-57PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK442e-47NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1J6IHV75e-56A0A1J6IHV7_NICAT; Nac domain-containing protein 79
STRINGXP_009786013.15e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1801044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-50Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]