PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg12946273g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 100aa    MW: 11016.3 Da    PI: 6.2465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg12946273g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-183885148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT  Ed +lv++v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Peinf101Ctg12946273g00001.1 38 KGPWTSAEDAILVEYVMKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 85
                                 79******************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4253389IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-253695IPR009057Homeodomain-like
SMARTSM007177.2E-143787IPR001005SANT/Myb domain
PfamPF002491.0E-163885IPR001005SANT/Myb domain
SuperFamilySSF466897.77E-203999IPR009057Homeodomain-like
CDDcd001678.00E-124085No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
NMSITSETDD WMTSKVDMDS PDEANGGGNV GGSLPLKKGP WTSAEDAILV EYVMKHGEGN  60
WNAVQKHSGL ARCGKSCRLR WANHLRPDLK KGAFTLEEER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-15361002588MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762153.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_009762156.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_009762161.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_009762167.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_016468034.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_016468041.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_016468047.11e-56PREDICTED: transcription factor GAMYB-like
RefseqXP_016468055.11e-56PREDICTED: transcription factor GAMYB-like
SwissprotA2WW872e-41GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A4D6FBN62e-64A0A4D6FBN6_PETHY; MYB33b
STRINGXP_009762153.15e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.14e-39myb domain protein 65