PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13084213g00002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 105aa MW: 11695.5 Da PI: 10.4264

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13084213g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.5	9.5e-30	45	95	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+++gk++ey+s Peinf101Ctg13084213g00002.1 45 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCS 95 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.296	37	97	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-40	37	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.08E-36	38	98	No hit	No description
SuperFamily	SSF55455	1.57E-30	38	100	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	39	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-29	39	59	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-23	46	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-29	59	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-29	74	95	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
TLSISSTSSS YTIHQIKFPY SPLSKPVTSK RSEILGMGRG KIEIKRIENS SNRQVTYSKR 60 RNGIIKKAKE ITVLCDAKVS LIIFGNSGKM HEYCSPSTTL PDMLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-17	37	95	1	59	MEF2 CHIMERA
6byy_B	1e-17	37	95	1	59	MEF2 CHIMERA
6byy_C	1e-17	37	95	1	59	MEF2 CHIMERA
6byy_D	1e-17	37	95	1	59	MEF2 CHIMERA
6bz1_A	1e-17	37	95	1	59	MEF2 CHIMERA
6bz1_B	1e-17	37	95	1	59	MEF2 CHIMERA
6bz1_C	1e-17	37	95	1	59	MEF2 CHIMERA
6bz1_D	1e-17	37	95	1	59	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X71417	1e-136	X71417.1 P.hybrida fbp3 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608638.1	2e-42	PREDICTED: floral homeotic protein PMADS 2
Refseq	XP_009803901.1	2e-42	PREDICTED: floral homeotic protein PMADS 2
Refseq	XP_016483128.1	2e-42	PREDICTED: floral homeotic protein PMADS 2-like
Refseq	XP_016492047.1	2e-42	PREDICTED: floral homeotic protein PMADS 2
Refseq	XP_019258175.1	2e-42	PREDICTED: floral homeotic protein PMADS 2
Swissprot	Q07474	7e-45	MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBL	Q40883	2e-42	Q40883_PETHY; FBP3
STRING	XP_009803901.1	8e-42	(Nicotiana sylvestris)
STRING	XP_009608638.1	8e-42	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4680	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	7e-34	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]