PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13284910g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YA

Protein Properties

Length: 115aa MW: 12391.3 Da PI: 9.9987

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13284910g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	42.7	1.8e-13	7	29	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh+hA+rR+R+sgGrF Peinf101Ctg13284910g00001.1 7 QPYLHESRHQHAMRRARASGGRF 29 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	18.213	1	32	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.2E-11	7	29	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
SPVLILQPYL HESRHQHAMR RARASGGRFA RKTDGDASKG TGSGSAFSSQ SVSSSGSEPL 60 QFNAADVQKR QENGRLAELQ HSYSNGSSYG NQSSFQESKD ESQSAESREG GSLRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM489759	1e-172	AM489759.1 Petunia x hybrida partial mRNA for YA4 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251747.1	3e-51	PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBL	A5PGU7	6e-69	A5PGU7_PETHY; YA4 (Fragment)
STRING	XP_009624416.1	1e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48