PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13321838g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 112aa MW: 12258.7 Da PI: 4.7087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13321838g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.9	3e-18	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Peinf101Ctg13321838g00001.1 2 LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAE 53 799********************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.648	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-16	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DLLQTQLAIA QAEVVHMRMR 60 QFSSMSSGDT GGNSPENVSP SSRHTQAQPT MSLFTMDMVV DHTNMGESLW SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-19	1	72	58	121	LOB family transfactor Ramosa2.1
5ly0_B	9e-19	1	72	58	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	1e-100	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603165.1	3e-71	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	8e-32	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S4BXL9	9e-70	A0A1S4BXL9_TOBAC; LOB domain-containing protein 4-like
STRING	XP_009603165.1	1e-70	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-25	LOB domain-containing protein 4