PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13364766g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 120aa MW: 13603.6 Da PI: 10.3517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13364766g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121	1.1e-37	5	105	27	128
NAM 27 kleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 +l++ +i+ev++y+++PwdLp+ + +e+ew+fFs+rd+ky++g r+nr+t+sgyWkatg+dk++ls+ g+ +g+kk Lvf Peinf101Ctg13364766g00003.1 5 PLPA-AIIAEVELYNYNPWDLPRLALFGEDEWFFFSPRDRKYPNGVRPNRTTSSGYWKATGTDKPILSSIGSRIGVKKALVF 85 4555.67*************76667899***********************************99******* PP NAM 109 ykgrapkgektdWvmheyrl 128 y+g+apkg+ktdW+m eyrl Peinf101Ctg13364766g00003.1 86 YTGKAPKGVKTDWIMIEYRL 105 ****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.734	1	120	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-42	2	109	IPR003441	NAC domain
Pfam	PF02365	7.5E-15	21	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
VNSHPLPAAI IAEVELYNYN PWDLPRLALF GEDEWFFFSP RDRKYPNGVR PNRTTSSGYW 60 KATGTDKPIL SSIGSRIGVK KALVFYTGKA PKGVKTDWIM IEYRLPDRAI QPSRSAGSMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	10	120	48	153	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	10	120	48	153	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	10	120	48	153	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	10	120	48	153	NO APICAL MERISTEM PROTEIN
4dul_A	2e-49	10	120	48	153	NAC domain-containing protein 19
4dul_B	2e-49	10	120	48	153	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108046.1	7e-67	NAC domain-containing protein 102-like
Refseq	XP_027173676.1	5e-67	NAC domain-containing protein 2-like
Swissprot	Q8GY42	2e-51	NAC25_ARATH; NAC transcription factor 25
Swissprot	Q8H4S4	1e-50	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A068UFT8	1e-65	A0A068UFT8_COFCA; Uncharacterized protein
STRING	XP_006488646.1	1e-60	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	7e-54	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]