PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13381308g00002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 85aa    MW: 9372.57 Da    PI: 4.0837
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13381308g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26054.24.3e-1725349100
                       DUF260  49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                  lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e
  Peinf101Ctg13381308g00002.1   2 LPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQKQVNELQAQLAKTQAE 53 
                                  78899*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.431154IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-15251IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.602.0E-4671No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
ELPEYQRADA VSSMVYEANA RLRDPVYGSA GAICQLQKQV NELQAQLAKT QAELVNIQCQ  60
QANIMALVYM EMGQSPPTSP EQSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1616158118LOB family transfactor Ramosa2.1
5ly0_B3e-1616158118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079078.17e-52LOB domain-containing protein 1-like
SwissprotQ9LQR01e-27LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK084e-27LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM1AC131e-49M1AC13_SOLTU; Uncharacterized protein
STRINGSolyc06g075330.1.12e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-30LOB domain-containing protein 1