PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13404484g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 116aa    MW: 13098.9 Da    PI: 8.2461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13404484g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-084190147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                                 r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Peinf101Ctg13404484g00003.1 41 RRPFSVSEVEALVEAVEQLGTGRWRDVKMRAFdcaDHRTYVDLKDKWKTL 90
                                 67899*********************9766668**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4413695IPR017930Myb domain
SMARTSM007179.9E-84093IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-114191IPR009057Homeodomain-like
PfamPF002494.6E-64190IPR001005SANT/Myb domain
SuperFamilySSF466894.16E-1542114IPR009057Homeodomain-like
CDDcd116607.73E-184292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
DEAVPDCKAL AIVPPVNEEA VAVVSANHKS RRSELSQRRT RRPFSVSEVE ALVEAVEQLG  60
TGRWRDVKMR AFDCADHRTY VDLKDKWKTL VHTASIAPQQ RRGEPVPQEL LDRVLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-5627116392Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785792.15e-67PREDICTED: telomere repeat-binding protein 3-like isoform X1
RefseqXP_009785793.14e-67PREDICTED: telomere repeat-binding protein 3-like isoform X2
RefseqXP_016481145.15e-67PREDICTED: LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like
RefseqXP_019238740.16e-67PREDICTED: telomere repeat-binding protein 4-like
SwissprotQ9C7B14e-53TRP3_ARATH; Telomere repeat-binding protein 3
TrEMBLA0A1J6KI461e-65A0A1J6KI46_NICAT; Telomere repeat-binding protein 3
TrEMBLA0A1S4AX001e-65A0A1S4AX00_TOBAC; LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like
TrEMBLA0A1U7X0V71e-65A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1
TrEMBLA0A1U7X4K39e-66A0A1U7X4K3_NICSY; telomere repeat-binding protein 3-like isoform X2
STRINGXP_009785792.12e-66(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.19e-32TRF-like 2
Publications ? help Back to Top
  1. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  2. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]