PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13455094g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family SRS
Protein Properties Length: 246aa    MW: 26279.7 Da    PI: 8.9379
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13455094g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702119.44.8e-371412424103
                       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkq 83 
                                   +++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + + +   aa s+  +++++k++r  +s+++
  Peinf101Ctg13455094g00001.1 141 SSTTCQDCGNQAKKDCPHKRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMGTGTDVVAAGSSsqSTSSAKKPRLVNSQAT 222
                                  5689*********************************************998877766655544347788899999999999 PP

                       DUF702  84 salsstklssaeskkelets 103
                                  +++s+t++s+++++++++ts
  Peinf101Ctg13455094g00001.1 223 TTASHTSTSNTTPQRSFDTS 242
                                  *************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-32142235IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.7E-27144186IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQINYGLPHE MGMFVVTPAS FHHHHQENSI NFDNLHHHHQ SLNGSNISTS PTTNTSLGVG  60
VGVGVIPLLT ATPLTNMVSF DDHQDLVSRN RGGTNDHSGG SGFQFFSNQQ QNSPNYNKTS  120
NIPSNFTSGG GNIGGGSISS SSTTCQDCGN QAKKDCPHKR CRTCCKSRGF DCTTHVKSTW  180
VPAARRRERQ LMGTGTDVVA AGSSSQSTSS AKKPRLVNSQ ATTTASHTST SNTTPQRSFD  240
TSSSHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754503e-67HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796421.11e-98PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_016458851.11e-98PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A1S3Z3393e-97A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A1U7Y3893e-97A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_009796421.16e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.31e-30Lateral root primordium (LRP) protein-related